Discrimination of symbiotic/parasitic bacterial type III secretion system effector protein using principal component analysis

• Item type: SIG Technical Reports(1)
• 公開日: 2013-06-20
• タイトル: Discrimination of symbiotic/parasitic bacterial type III secretion system effector protein using principal component analysis
• タイトル / 言語: en
• タイトル: Discrimination of symbiotic/parasitic bacterial type III secretion system effector protein using principal component analysis
• 言語: eng
• キーワード / 主題Scheme: Other
• キーワード / 主題: 一般（BIO）
• 資源タイプ / 資源タイプ識別子: http://purl.org/coar/resource_type/c_18gh
• 資源タイプ: technical report
• 著者所属: Department of Physics, Chuo University
• 著者所属: Department of Biological Science, Chuo University
• 著者所属: Department of Biological Science, Chuo University
• 著者所属: Department of Physics, Chuo University
• 著者所属(英): en
• 著者所属(英): Department of Physics, Chuo University
• 著者所属(英): en
• 著者所属(英): Department of Biological Science, Chuo University
• 著者所属(英): en
• 著者所属(英): Department of Biological Science, Chuo University
• 著者所属(英): en
• 著者所属(英): Department of Physics, Chuo University
• 著者名: Yuuichi, Nakano; Mitsuo, Iwadate; Hideaki, Umeyama; Y-H.Taguchi
• 著者名(英): Yuuichi, Nakano; Mitsuo, Iwadate; Hideaki, Umeyama; Y-H., Taguchi
• 論文抄録 / 内容記述タイプ: Other
• 論文抄録 / 内容記述: Type III secretion system (T3SS) effector protein is a part of bacterial secretion systems. T3SS exists in the pathogenic and symbiotic bacteria. How the T3SS effector proteins in these two classes differ from each other should be interesting. In this paper, we proposed the usage of principal component analysis based linear discriminant analysis that discriminates T3SS effector proteins between plant pathogenic, animal pathogenic and plant symbiotic bacteria by the accuracy of 0.77. We also hypothesized that the feature vector proposed by Yahara et al represents protein structure, possibly protein folds defined in Structural Classification of Proteins (SCOP) database.
• 論文抄録(英) / 内容記述タイプ: Other
• 論文抄録(英) / 内容記述: Type III secretion system (T3SS) effector protein is a part of bacterial secretion systems. T3SS exists in the pathogenic and symbiotic bacteria. How the T3SS effector proteins in these two classes differ from each other should be interesting. In this paper, we proposed the usage of principal component analysis based linear discriminant analysis that discriminates T3SS effector proteins between plant pathogenic, animal pathogenic and plant symbiotic bacteria by the accuracy of 0.77. We also hypothesized that the feature vector proposed by Yahara et al represents protein structure, possibly protein folds defined in Structural Classification of Proteins (SCOP) database.
• 書誌レコードID / 収録物識別子タイプ: NCID
• 書誌レコードID / 収録物識別子: AA12055912
• 書誌情報: 研究報告バイオ情報学（BIO）; 巻 2013-BIO-34, 号 10, p. 1-8, 発行日 2013-06-20
• Notice: SIG Technical Reports are nonrefereed and hence may later appear in any journals, conferences, symposia, etc.
• 出版者 / 言語: ja
• 出版者: 情報処理学会