{"created":"2025-01-18T22:57:32.274650+00:00","updated":"2025-01-22T18:42:40.996919+00:00","metadata":{"_oai":{"id":"oai:ipsj.ixsq.nii.ac.jp:00027087","sets":["1164:2036:2049:2054"]},"path":["2054"],"owner":"1","recid":"27087","title":["FPGAを用いた生化学シミュレータReCSiPにおける数値積分機構の性能改善手法"],"pubdate":{"attribute_name":"公開日","attribute_value":"2006-01-18"},"_buckets":{"deposit":"b591caf5-942f-492e-8a36-7cc56e945e01"},"_deposit":{"id":"27087","pid":{"type":"depid","value":"27087","revision_id":0},"owners":[1],"status":"published","created_by":1},"item_title":"FPGAを用いた生化学シミュレータReCSiPにおける数値積分機構の性能改善手法","author_link":["0","0"],"item_titles":{"attribute_name":"タイトル","attribute_value_mlt":[{"subitem_title":"FPGAを用いた生化学シミュレータReCSiPにおける数値積分機構の性能改善手法"},{"subitem_title":"A Performance Improvement Strategy for Numerical Integration on an FPGA-Based Biochemical Simulator ReCSiP","subitem_title_language":"en"}]},"item_type_id":"4","publish_date":"2006-01-18","item_4_text_3":{"attribute_name":"著者所属","attribute_value_mlt":[{"subitem_text_value":"慶應義塾大学理工学部"},{"subitem_text_value":"慶應義塾大学大学院理工学研究科"},{"subitem_text_value":"慶應義塾大学大学院理工学研究科"},{"subitem_text_value":"慶應義塾大学大学院理工学研究科"},{"subitem_text_value":"慶應義塾大学理工学部"},{"subitem_text_value":"科学技術振興機構北野共生システムプロジェクト"},{"subitem_text_value":"科学技術振興機構北野共生システムプロジェクト"},{"subitem_text_value":"長崎大学工学部情報システムエ学科"},{"subitem_text_value":"長崎大学工学部情報システムエ学科"},{"subitem_text_value":"科学技術振興機構北野共生システムプロジェクト"},{"subitem_text_value":"慶應義塾大学理工学部"}]},"item_4_text_4":{"attribute_name":"著者所属(英)","attribute_value_mlt":[{"subitem_text_value":"Faculty of Science and Technology, Keio University","subitem_text_language":"en"},{"subitem_text_value":"Graduate School of Science and Technology, Keio University","subitem_text_language":"en"},{"subitem_text_value":"Graduate School of Science and Technology, Keio University","subitem_text_language":"en"},{"subitem_text_value":"Graduate School of Science and Technology, Keio University","subitem_text_language":"en"},{"subitem_text_value":"Faculty of Science and Technology, Keio University","subitem_text_language":"en"},{"subitem_text_value":"Kitano Symbiotic Systems Project, ERATO-SORST, Japan Science and Technology Agency","subitem_text_language":"en"},{"subitem_text_value":"Kitano Symbiotic Systems Project, ERATO-SORST, Japan Science and Technology Agency","subitem_text_language":"en"},{"subitem_text_value":"Dept. of Computer and Information Sciences, Nagasaki University","subitem_text_language":"en"},{"subitem_text_value":"Dept. of Computer and Information Sciences, Nagasaki University","subitem_text_language":"en"},{"subitem_text_value":"Kitano Symbiotic Systems Project, ERATO-SORST, Japan Science and Technology Agency","subitem_text_language":"en"},{"subitem_text_value":"Graduate School of Science and Technology, Keio University","subitem_text_language":"en"}]},"item_language":{"attribute_name":"言語","attribute_value_mlt":[{"subitem_language":"jpn"}]},"item_publisher":{"attribute_name":"出版者","attribute_value_mlt":[{"subitem_publisher":"情報処理学会","subitem_publisher_language":"ja"}]},"publish_status":"0","weko_shared_id":-1,"item_file_price":{"attribute_name":"Billing file","attribute_type":"file","attribute_value_mlt":[{"url":{"url":"https://ipsj.ixsq.nii.ac.jp/record/27087/files/IPSJ-SLDM06123019.pdf"},"date":[{"dateType":"Available","dateValue":"2008-01-18"}],"format":"application/pdf","billing":["billing_file"],"filename":"IPSJ-SLDM06123019.pdf","filesize":[{"value":"373.5 kB"}],"mimetype":"application/pdf","priceinfo":[{"tax":["include_tax"],"price":"660","billingrole":"5"},{"tax":["include_tax"],"price":"330","billingrole":"6"},{"tax":["include_tax"],"price":"0","billingrole":"10"},{"tax":["include_tax"],"price":"0","billingrole":"44"}],"accessrole":"open_date","version_id":"78785334-5868-46c8-b3f3-a853e77cc445","displaytype":"detail","licensetype":"license_note","license_note":"Copyright (c) 2006 by the Information Processing Society of Japan"}]},"item_4_creator_5":{"attribute_name":"著者名","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{"creatorName":"西川, 由理"},{"creatorName":"長名, 保範"},{"creatorName":"吉見, 真聡"},{"creatorName":"岩岡, 洋"},{"creatorName":"小嶋, 利紀"},{"creatorName":"舟橋, 啓"},{"creatorName":"広井, 賀子"},{"creatorName":"柴田, 裕一郎"},{"creatorName":"岩永, 直樹"},{"creatorName":"北野, 宏明"},{"creatorName":"天野, 英晴"}],"nameIdentifiers":[{}]}]},"item_4_creator_6":{"attribute_name":"著者名(英)","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{"creatorName":"Yuri, NISHIKAWA","creatorNameLang":"en"},{"creatorName":"Yasunori, OSANA","creatorNameLang":"en"},{"creatorName":"Masato, YOSHIMI","creatorNameLang":"en"},{"creatorName":"Yow, IWAOKA","creatorNameLang":"en"},{"creatorName":"Toshinori, KOJIMA","creatorNameLang":"en"},{"creatorName":"Akira, FUNAHASHI","creatorNameLang":"en"},{"creatorName":"Noriko, HIROI","creatorNameLang":"en"},{"creatorName":"Yuichiro, SHIBATA","creatorNameLang":"en"},{"creatorName":"Naoki, IWANAGA","creatorNameLang":"en"},{"creatorName":"Hiroaki, KITANO","creatorNameLang":"en"},{"creatorName":"Hideharu, AMANO","creatorNameLang":"en"}],"nameIdentifiers":[{}]}]},"item_4_source_id_9":{"attribute_name":"書誌レコードID","attribute_value_mlt":[{"subitem_source_identifier":"AA11451459","subitem_source_identifier_type":"NCID"}]},"item_4_textarea_12":{"attribute_name":"Notice","attribute_value_mlt":[{"subitem_textarea_value":"SIG Technical Reports are nonrefereed and hence may later appear in any journals, conferences, symposia, etc."}]},"item_resource_type":{"attribute_name":"資源タイプ","attribute_value_mlt":[{"resourceuri":"http://purl.org/coar/resource_type/c_18gh","resourcetype":"technical report"}]},"item_4_description_7":{"attribute_name":"論文抄録","attribute_value_mlt":[{"subitem_description":"近年のバイオインフォマティクスにおいて、計算機上での生化学シミュレーションは、細胞内の生化学反応を解析する非常に有効な方法である。しかしシミュレーション対象となる系の大規模化が進むにつれ、高スループットのシミュレータの開発が急務となる。ReCSiPは、FPGAを用いて高速なシミュレーションを実現するシステムとして開発されており、本研究ではその反応速度式を解くモジュールと数値積分を行うモジュールを並列動作させることによってパイプライン稼働率の向上を図った。本研究報告ではその方法論の提案、ReCSiPへの実装および回路面積速度効率の評価を示し、その結果について検討する。従来方式と比べ1.29倍の面積で、最高1.96倍のスループットを実現した。","subitem_description_type":"Other"}]},"item_4_description_8":{"attribute_name":"論文抄録(英)","attribute_value_mlt":[{"subitem_description":"Computational simulation is a highly effective solution for cellular analyses in recent bioinformatics. As the scale of analysis objects are rapidly expanding, however, it is a prime task to develop a simulator with high throughput. ReCSiP, an FPGA-based biochemical simulator, is being exploited for this necessity. Further speed-up of the simulator is enhanced with an improvement of its pipelining efficiency, by a parallel operation of a rate-law solver module and a numerical integration module. This research report discusses the methodology of enhancing the performance of ReCSiP, its implementation and the evaluation result. Speed-up of 1.96x in maximum is achieved with an area increase of 29% compared to the conventional implementation.","subitem_description_type":"Other"}]},"item_4_biblio_info_10":{"attribute_name":"書誌情報","attribute_value_mlt":[{"bibliographicPageEnd":"112","bibliographic_titles":[{"bibliographic_title":"情報処理学会研究報告システムLSI設計技術（SLDM）"}],"bibliographicPageStart":"107","bibliographicIssueDates":{"bibliographicIssueDate":"2006-01-18","bibliographicIssueDateType":"Issued"},"bibliographicIssueNumber":"4(2006-SLDM-123)","bibliographicVolumeNumber":"2006"}]},"relation_version_is_last":true,"weko_creator_id":"1"},"id":27087,"links":{}}