{"metadata":{"_oai":{"id":"oai:ipsj.ixsq.nii.ac.jp:00218623","sets":["1164:2735:10865:10962"]},"path":["10962"],"owner":"44499","recid":"218623","title":["Identification of DNA Loops in the Genome by Multidimensional Scaling"],"pubdate":{"attribute_name":"公開日","attribute_value":"2022-06-20"},"_buckets":{"deposit":"a6822cfd-ce35-4a08-af32-3e182f8d29a8"},"_deposit":{"id":"218623","pid":{"type":"depid","value":"218623","revision_id":0},"owners":[44499],"status":"published","created_by":44499},"item_title":"Identification of DNA Loops in the Genome by Multidimensional Scaling","author_link":["569008","569010","569009","569011"],"item_titles":{"attribute_name":"タイトル","attribute_value_mlt":[{"subitem_title":"Identification of DNA Loops in the Genome by Multidimensional Scaling"},{"subitem_title":"Identification of DNA Loops in the Genome by Multidimensional Scaling","subitem_title_language":"en"}]},"item_type_id":"4","publish_date":"2022-06-20","item_4_text_3":{"attribute_name":"著者所属","attribute_value_mlt":[{"subitem_text_value":"Physics Major, Graduate School of Science and Engineering, Chuo University"},{"subitem_text_value":"Department of Physics, Chuo University"}]},"item_4_text_4":{"attribute_name":"著者所属(英)","attribute_value_mlt":[{"subitem_text_value":"Physics Major, Graduate School of Science and Engineering, Chuo University","subitem_text_language":"en"},{"subitem_text_value":"Department of Physics, Chuo University","subitem_text_language":"en"}]},"item_language":{"attribute_name":"言語","attribute_value_mlt":[{"subitem_language":"eng"}]},"item_publisher":{"attribute_name":"出版者","attribute_value_mlt":[{"subitem_publisher":"情報処理学会","subitem_publisher_language":"ja"}]},"publish_status":"0","weko_shared_id":-1,"item_file_price":{"attribute_name":"Billing file","attribute_type":"file","attribute_value_mlt":[{"url":{"url":"https://ipsj.ixsq.nii.ac.jp/record/218623/files/IPSJ-MPS22138053.pdf","label":"IPSJ-MPS22138053.pdf"},"date":[{"dateType":"Available","dateValue":"2024-06-20"}],"format":"application/pdf","billing":["billing_file"],"filename":"IPSJ-MPS22138053.pdf","filesize":[{"value":"1.4 MB"}],"mimetype":"application/pdf","priceinfo":[{"tax":["include_tax"],"price":"660","billingrole":"5"},{"tax":["include_tax"],"price":"330","billingrole":"6"},{"tax":["include_tax"],"price":"0","billingrole":"17"},{"tax":["include_tax"],"price":"0","billingrole":"44"}],"accessrole":"open_date","version_id":"07bdcb52-f5f7-4a3f-b376-b91b5f018329","displaytype":"detail","licensetype":"license_note","license_note":"Copyright (c) 2022 by the Information Processing Society of Japan"}]},"item_4_creator_5":{"attribute_name":"著者名","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{"creatorName":"Ryo, Ishibashi"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Y-H., Taguchi"}],"nameIdentifiers":[{}]}]},"item_4_creator_6":{"attribute_name":"著者名(英)","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{"creatorName":"Ryo, Ishibashi","creatorNameLang":"en"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Y-H., Taguchi","creatorNameLang":"en"}],"nameIdentifiers":[{}]}]},"item_4_source_id_9":{"attribute_name":"書誌レコードID","attribute_value_mlt":[{"subitem_source_identifier":"AN10505667","subitem_source_identifier_type":"NCID"}]},"item_4_textarea_12":{"attribute_name":"Notice","attribute_value_mlt":[{"subitem_textarea_value":"SIG Technical Reports are nonrefereed and hence may later appear in any journals, conferences, symposia, etc."}]},"item_resource_type":{"attribute_name":"資源タイプ","attribute_value_mlt":[{"resourceuri":"http://purl.org/coar/resource_type/c_18gh","resourcetype":"technical report"}]},"item_4_source_id_11":{"attribute_name":"ISSN","attribute_value_mlt":[{"subitem_source_identifier":"2188-8833","subitem_source_identifier_type":"ISSN"}]},"item_4_description_7":{"attribute_name":"論文抄録","attribute_value_mlt":[{"subitem_description":"The accessibility of genomic information depends on how DNA is packed into chromatin. Euchromatin is a genome region consisting of DNA with a relatively loose structure. The open structure allows RNA polymerase and other proteins to access the genome for DNA transcription. Gene expression is controlled by promotors located near the gene and gene regulatory sites called enhancers located from the gene. However, how promoters and enhancers interact with each other to regulate gene expression is not well understood. Hi-C can be used to analyze the 3D structure of a genome by detecting genomic regions that are spatially close to each other using next-generation sequencing. The conventional method led to an approximation of the genome structure from the Hi-C heatmap [1]. We demonstrated the potential of using the Hi-C method for identifying DNA loops by applying Multi-Dimensional Scaling (MDS).","subitem_description_type":"Other"}]},"item_4_description_8":{"attribute_name":"論文抄録(英)","attribute_value_mlt":[{"subitem_description":"The accessibility of genomic information depends on how DNA is packed into chromatin. Euchromatin is a genome region consisting of DNA with a relatively loose structure. The open structure allows RNA polymerase and other proteins to access the genome for DNA transcription. Gene expression is controlled by promotors located near the gene and gene regulatory sites called enhancers located from the gene. However, how promoters and enhancers interact with each other to regulate gene expression is not well understood. Hi-C can be used to analyze the 3D structure of a genome by detecting genomic regions that are spatially close to each other using next-generation sequencing. The conventional method led to an approximation of the genome structure from the Hi-C heatmap [1]. We demonstrated the potential of using the Hi-C method for identifying DNA loops by applying Multi-Dimensional Scaling (MDS).","subitem_description_type":"Other"}]},"item_4_biblio_info_10":{"attribute_name":"書誌情報","attribute_value_mlt":[{"bibliographicPageEnd":"5","bibliographic_titles":[{"bibliographic_title":"研究報告数理モデル化と問題解決（MPS）"}],"bibliographicPageStart":"1","bibliographicIssueDates":{"bibliographicIssueDate":"2022-06-20","bibliographicIssueDateType":"Issued"},"bibliographicIssueNumber":"53","bibliographicVolumeNumber":"2022-MPS-138"}]},"relation_version_is_last":true,"weko_creator_id":"44499"},"id":218623,"updated":"2025-01-19T15:06:16.045716+00:00","links":{},"created":"2025-01-19T01:18:58.706182+00:00"}