{"id":203859,"updated":"2025-01-19T20:25:11.465914+00:00","links":{},"created":"2025-01-19T01:06:11.635182+00:00","metadata":{"_oai":{"id":"oai:ipsj.ixsq.nii.ac.jp:00203859","sets":["1164:2240:10178:10179"]},"path":["10179"],"owner":"44499","recid":"203859","title":["DNAアライメントプログラムBWA-MEMのArm SVE移植と「富岳」試作機での性能評価"],"pubdate":{"attribute_name":"公開日","attribute_value":"2020-03-09"},"_buckets":{"deposit":"fa949350-dc20-420b-a223-00a0bc2eb8d1"},"_deposit":{"id":"203859","pid":{"type":"depid","value":"203859","revision_id":0},"owners":[44499],"status":"published","created_by":44499},"item_title":"DNAアライメントプログラムBWA-MEMのArm SVE移植と「富岳」試作機での性能評価","author_link":["503761","503768","503767","503765","503766","503762","503763","503764"],"item_titles":{"attribute_name":"タイトル","attribute_value_mlt":[{"subitem_title":"DNAアライメントプログラムBWA-MEMのArm SVE移植と「富岳」試作機での性能評価"}]},"item_keyword":{"attribute_name":"キーワード","attribute_value_mlt":[{"subitem_subject":"計算アルゴリズム","subitem_subject_scheme":"Other"}]},"item_type_id":"4","publish_date":"2020-03-09","item_4_text_3":{"attribute_name":"著者所属","attribute_value_mlt":[{"subitem_text_value":"理化学研究所計算科学研究センター"},{"subitem_text_value":"東京大学医科学研究所"},{"subitem_text_value":"富士通株式会社"},{"subitem_text_value":"富士通株式会社"},{"subitem_text_value":"富士通株式会社"},{"subitem_text_value":"理化学研究所計算科学研究センター／現在，株式会社日立製作所"},{"subitem_text_value":"理化学研究所計算科学研究センター"},{"subitem_text_value":"東京大学医科学研究所"}]},"item_4_text_4":{"attribute_name":"著者所属(英)","attribute_value_mlt":[{"subitem_text_value":"RIKEN R-CCS","subitem_text_language":"en"},{"subitem_text_value":"The Institute of Medical Science, The University of Tokyo","subitem_text_language":"en"},{"subitem_text_value":"Fujitsu Limited","subitem_text_language":"en"},{"subitem_text_value":"Fujitsu Limited","subitem_text_language":"en"},{"subitem_text_value":"Fujitsu Limited","subitem_text_language":"en"},{"subitem_text_value":"RIKEN R-CCS / Presently with Hitachi, Ltd.","subitem_text_language":"en"},{"subitem_text_value":"RIKEN R-CCS","subitem_text_language":"en"},{"subitem_text_value":"The Institute of Medical Science, The University of Tokyo","subitem_text_language":"en"}]},"item_language":{"attribute_name":"言語","attribute_value_mlt":[{"subitem_language":"jpn"}]},"item_publisher":{"attribute_name":"出版者","attribute_value_mlt":[{"subitem_publisher":"情報処理学会","subitem_publisher_language":"ja"}]},"publish_status":"0","weko_shared_id":-1,"item_file_price":{"attribute_name":"Billing file","attribute_type":"file","attribute_value_mlt":[{"url":{"url":"https://ipsj.ixsq.nii.ac.jp/record/203859/files/IPSJ-HPC20173016.pdf","label":"IPSJ-HPC20173016.pdf"},"date":[{"dateType":"Available","dateValue":"2022-03-09"}],"format":"application/pdf","billing":["billing_file"],"filename":"IPSJ-HPC20173016.pdf","filesize":[{"value":"1.2 MB"}],"mimetype":"application/pdf","priceinfo":[{"tax":["include_tax"],"price":"660","billingrole":"5"},{"tax":["include_tax"],"price":"330","billingrole":"6"},{"tax":["include_tax"],"price":"0","billingrole":"14"},{"tax":["include_tax"],"price":"0","billingrole":"44"}],"accessrole":"open_date","version_id":"e01ad624-20e9-4c3c-b7ce-a8f7bbe0001e","displaytype":"detail","licensetype":"license_note","license_note":"Copyright (c) 2020 by the Information Processing Society of Japan"}]},"item_4_creator_5":{"attribute_name":"著者名","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{"creatorName":"鈴木, 惣一朗"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"伊東, 聰"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"稲田, 由江"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"池田, 奈生"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"三吉, 郁夫"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"松葉, 浩也"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"石川, 裕"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"宮野, 悟"}],"nameIdentifiers":[{}]}]},"item_4_source_id_9":{"attribute_name":"書誌レコードID","attribute_value_mlt":[{"subitem_source_identifier":"AN10463942","subitem_source_identifier_type":"NCID"}]},"item_4_textarea_12":{"attribute_name":"Notice","attribute_value_mlt":[{"subitem_textarea_value":"SIG Technical Reports are nonrefereed and hence may later appear in any journals, conferences, symposia, etc."}]},"item_resource_type":{"attribute_name":"資源タイプ","attribute_value_mlt":[{"resourceuri":"http://purl.org/coar/resource_type/c_18gh","resourcetype":"technical report"}]},"item_4_source_id_11":{"attribute_name":"ISSN","attribute_value_mlt":[{"subitem_source_identifier":"2188-8841","subitem_source_identifier_type":"ISSN"}]},"item_4_description_7":{"attribute_name":"論文抄録","attribute_value_mlt":[{"subitem_description":"遺伝子解析では，シークエンサが読み取った DNA 断片群の塩基配列に対して，標準 DNA 配列上でのその位置を特定するアライメント処理に多くの計算資源が必要とされる．現在この処理には，高速かつ高精度のため，アライメントプログラム BWA-MEM が広く利用されている．しかし，BWA-MEM は，計算ホットスポットの一部を SSE2 組み込み関数を使用して SIMD 化しているため，実行環境が Intel アーキテクチャに制限されていた．本稿では，BWA-MEM の Armv8-A アーキテクチャ上の SIMD 拡張である SVE への移植を行い，SVE 命令セットを実装した富士通 A64FX プロセッサを搭載したスーパーコンピュータ「富岳」試作機での性能を評価した．","subitem_description_type":"Other"}]},"item_4_biblio_info_10":{"attribute_name":"書誌情報","attribute_value_mlt":[{"bibliographicPageEnd":"8","bibliographic_titles":[{"bibliographic_title":"研究報告ハイパフォーマンスコンピューティング（HPC）"}],"bibliographicPageStart":"1","bibliographicIssueDates":{"bibliographicIssueDate":"2020-03-09","bibliographicIssueDateType":"Issued"},"bibliographicIssueNumber":"16","bibliographicVolumeNumber":"2020-HPC-173"}]},"relation_version_is_last":true,"weko_creator_id":"44499"}}