{"links":{},"id":18594,"metadata":{"_oai":{"id":"oai:ipsj.ixsq.nii.ac.jp:00018594","sets":["934:1151:1153:1154"]},"path":["1154"],"owner":"1","recid":"18594","title":["Reaction Structure Profile: A Comparative Analysis of Metabolic Pathways Based on Important Substructures"],"pubdate":{"attribute_name":"公開日","attribute_value":"2008-03-15"},"_buckets":{"deposit":"b4f5d916-263f-4410-94b6-fbd8cf883246"},"_deposit":{"id":"18594","pid":{"type":"depid","value":"18594","revision_id":0},"owners":[1],"status":"published","created_by":1},"item_title":"Reaction Structure Profile: A Comparative Analysis of Metabolic Pathways Based on Important Substructures","author_link":["0","0"],"item_titles":{"attribute_name":"タイトル","attribute_value_mlt":[{"subitem_title":"Reaction Structure Profile: A Comparative Analysis of Metabolic Pathways Based on Important Substructures"},{"subitem_title":"Reaction Structure Profile: A Comparative Analysis of Metabolic Pathways Based on Important Substructures","subitem_title_language":"en"}]},"item_keyword":{"attribute_name":"キーワード","attribute_value_mlt":[{"subitem_subject":"Original Papers","subitem_subject_scheme":"Other"}]},"item_type_id":"3","publish_date":"2008-03-15","item_3_text_3":{"attribute_name":"著者所属","attribute_value_mlt":[{"subitem_text_value":"Graduate School of Engineering  Kobe University"},{"subitem_text_value":"Organization of Advanced Science and Technology Kobe University"},{"subitem_text_value":"Graduate School of Engineering  Kobe University"}]},"item_3_text_4":{"attribute_name":"著者所属(英)","attribute_value_mlt":[{"subitem_text_value":"Graduate School of Engineering, Kobe University","subitem_text_language":"en"},{"subitem_text_value":"Organization of Advanced Science and Technology,Kobe University","subitem_text_language":"en"},{"subitem_text_value":"Graduate School of Engineering, Kobe University","subitem_text_language":"en"}]},"item_language":{"attribute_name":"言語","attribute_value_mlt":[{"subitem_language":"eng"}]},"item_publisher":{"attribute_name":"出版者","attribute_value_mlt":[{"subitem_publisher":"情報処理学会","subitem_publisher_language":"ja"}]},"publish_status":"0","weko_shared_id":-1,"item_file_price":{"attribute_name":"Billing file","attribute_type":"file","attribute_value_mlt":[{"url":{"url":"https://ipsj.ixsq.nii.ac.jp/record/18594/files/IPSJ-TBIO4905005.pdf"},"date":[{"dateType":"Available","dateValue":"2008-03-15"}],"format":"application/pdf","billing":["billing_file"],"filename":"IPSJ-TBIO4905005.pdf","filesize":[{"value":"497.3 kB"}],"mimetype":"application/pdf","priceinfo":[{"tax":["include_tax"],"price":"660","billingrole":"5"},{"tax":["include_tax"],"price":"330","billingrole":"6"},{"tax":["include_tax"],"price":"0","billingrole":"41"},{"tax":["include_tax"],"price":"0","billingrole":"44"}],"accessrole":"open_date","version_id":"b97ea45a-6b24-473b-8811-66adb6434d64","displaytype":"detail","licensetype":"license_note","license_note":"Copyright (c) 2008 by the Information Processing Society of Japan"}]},"item_3_creator_5":{"attribute_name":"著者名","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{"creatorName":"Yuta, Ashida"},{"creatorName":"Tomonobu, Ozaki"},{"creatorName":"Takenao, Ohkawa"}],"nameIdentifiers":[{}]}]},"item_3_creator_6":{"attribute_name":"著者名(英)","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{"creatorName":"Yuta, Ashida","creatorNameLang":"en"},{"creatorName":"Tomonobu, Ozaki","creatorNameLang":"en"},{"creatorName":"Takenao, Ohkawa","creatorNameLang":"en"}],"nameIdentifiers":[{}]}]},"item_3_source_id_9":{"attribute_name":"書誌レコードID","attribute_value_mlt":[{"subitem_source_identifier":"AA12177013","subitem_source_identifier_type":"NCID"}]},"item_resource_type":{"attribute_name":"資源タイプ","attribute_value_mlt":[{"resourceuri":"http://purl.org/coar/resource_type/c_6501","resourcetype":"journal article"}]},"item_3_source_id_11":{"attribute_name":"ISSN","attribute_value_mlt":[{"subitem_source_identifier":"1882-6679","subitem_source_identifier_type":"ISSN"}]},"item_3_description_7":{"attribute_name":"論文抄録","attribute_value_mlt":[{"subitem_description":"Comparative analysis of organisms with metabolic pathways gives important information about functions within organisms. In this paper  we propose a new method for comparing the metabolic pathways with reaction structures that include important enzymes. In this method  subgraphs from pathways that include ‘choke point’ or ‘load point’ are extracted as important “reaction structures ” and a “reaction structure profile ” which represents whether extracted reaction structures are observed in the metabolic pathway of other organisms  is created. Distance regarding function within organisms between species is defined using the“reaction structure profile.” By applying the proposed method to the metabolic networks of 64 representative organisms selected from Archaea  Eubacteria and Eukaryote in the KEGG database  we succeed in reconstructing a phylogenetic tree  and confirm the effectiveness of the method.","subitem_description_type":"Other"}]},"item_3_description_8":{"attribute_name":"論文抄録(英)","attribute_value_mlt":[{"subitem_description":"Comparative analysis of organisms with metabolic pathways gives important information about functions within organisms. In this paper, we propose a new method for comparing the metabolic pathways with reaction structures that include important enzymes. In this method, subgraphs from pathways that include ‘choke point’ or ‘load point’ are extracted as important “reaction structures,” and a “reaction structure profile,” which represents whether extracted reaction structures are observed in the metabolic pathway of other organisms, is created. Distance regarding function within organisms between species is defined using the“reaction structure profile.” By applying the proposed method to the metabolic networks of 64 representative organisms selected from Archaea, Eubacteria and Eukaryote in the KEGG database, we succeed in reconstructing a phylogenetic tree, and confirm the effectiveness of the method.","subitem_description_type":"Other"}]},"item_3_biblio_info_10":{"attribute_name":"書誌情報","attribute_value_mlt":[{"bibliographicPageEnd":"45","bibliographic_titles":[{"bibliographic_title":"IPSJ Transactions on Bioinformatics （TBIO） 　　"}],"bibliographicPageStart":"36","bibliographicIssueDates":{"bibliographicIssueDate":"2008-03-15","bibliographicIssueDateType":"Issued"},"bibliographicIssueNumber":"SIG5(TBIO4)","bibliographicVolumeNumber":"49"}]},"relation_version_is_last":true,"weko_creator_id":"1"},"created":"2025-01-18T22:51:17.385697+00:00","updated":"2025-01-22T22:39:43.404073+00:00"}